The Deep Structure of Biology contains a chapter by editor Simon Conway Morris as well as: Nicola Clayton, Celia Deane-Drummond, Nathan Emery, Robert Foley, Nigel Franks, John Haught, Richard Lenski, George McGhee, Karl Niklas, Michael Ruse, Anthony Trewavas, Hal Whitehead.

An overview of algorithms important to computational structural biology that addresses such topics as NMR and design and analysis of proteins.Using the tools of information technology to understand the molecular machinery of the cell offers both challenges and opportunities to computational scientists. Over the past decade, novel algorithms have been developed both for analyzing biological data and for synthetic biology problems such as protein engineering. This book explains the algorithmic foundations and computational approaches underlying areas of structural biology including NMR (nuclear magnetic resonance); X-ray crystallography; and the design and analysis of proteins, peptides, and small molecules. Each chapter offers a concise overview of important concepts, focusing on a key topic in the field. Four chapters offer a short course in algorithmic and computational issues related to NMR structural biology, giving the reader a useful toolkit with which to approach the fascinating yet thorny computational problems in this area. A recurrent theme is understanding the interplay between biophysical experiments and computational algorithms. The text emphasizes the mathematical foundations of structural biology while maintaining a balance between algorithms and a nuanced understanding of experimental data. Three emerging areas, particularly fertile ground for research students, are highlighted: NMR methodology, design of proteins and other molecules, and the modeling of protein flexibility. The next generation of computational structural biologists will need training in geometric algorithms, provably good approximation algorithms, scientific computation, and an array of techniques for handling noise and uncertainty in combinatorial geometry and computational biophysics. This book is an essential guide for young scientists on their way to research success in this exciting field.

This timely volume provides a comprehensive account of the natural history of the organisms associated with the deep-sea floor and examines their relationship with this inhospitable environment--perhaps the most remote and least accessible location on the planet. The authors begin by describing the physical and chemical nature of the deep-sea floor and the methods used to collect and study its fauna. Then they discuss the ecology of the deep sea by exploring spatial patterns, diversity, biomass, vertical zonation, and large-scale distribution of organisms. Subsequent chapters review current knowledge of feeding, respiration, reproduction, and growth processes in these communities. The unique fauna of hypothermal vents and seeps are considered separately. Finally, there is a pertinent discussion of human exploitation of deep-sea resources and potential use of this environment for waste disposal.

This book provides a comprehensive coverage of the basic principles of structural biology, as well as an up-to-date summary of some main directions of research in the field. The relationship between structure and function is described in detail for soluble proteins, membrane proteins, membranes, and nucleic acids.There are several books covering protein structure and function, but none that give a complete picture, including nucleic acids, lipids, membranes and carbohydrates, all being of central importance in structural biology.The book covers state-of-the-art research in various areas. It is unique for its breadth of coverage by experts in the fields. The book is richly illustrated with more than 400 color figures to highlight the wide range of structures.

Advances in Protein Molecular and Structural Biology Methods offers a complete overview of the latest tools and methods applicable to the study of proteins at the molecular and structural level. The book begins with sections exploring tools to optimize recombinant protein expression and biophysical techniques such as fluorescence spectroscopy, NMR, mass spectrometry, cryo-electron microscopy, and X-ray crystallography. It then moves towards computational approaches, considering structural bioinformatics, molecular dynamics simulations, and deep machine learning technologies. The book also covers methods applied to intrinsically disordered proteins (IDPs)followed by chapters on protein interaction networks, protein function, and protein design and engineering. It provides researchers with an extensive toolkit of methods and techniques to draw from when conducting their own experimental work, taking them from foundational concepts to practical application. - Presents a thorough overview of the latest and emerging methods and technologies for protein study - Explores biophysical techniques, including nuclear magnetic resonance, X-ray crystallography, and cryo-electron microscopy - Includes computational and machine learning methods - Features a section dedicated to tools and techniques specific to studying intrinsically disordered proteins

The world’s most revered and eloquent interpreter of evolutionary ideas offers here a work of explanatory force unprecedented in our time—a landmark publication, both for its historical sweep and for its scientific vision. With characteristic attention to detail, Stephen Jay Gould first describes the content and discusses the history and origins of the three core commitments of classical Darwinism: that natural selection works on organisms, not genes or species; that it is almost exclusively the mechanism of adaptive evolutionary change; and that these changes are incremental, not drastic. Next, he examines the three critiques that currently challenge this classic Darwinian edifice: that selection operates on multiple levels, from the gene to the group; that evolution proceeds by a variety of mechanisms, not just natural selection; and that causes operating at broader scales, including catastrophes, have figured prominently in the course of evolution. Then, in a stunning tour de force that will likely stimulate discussion and debate for decades, Gould proposes his own system for integrating these classical commitments and contemporary critiques into a new structure of evolutionary thought. In 2001 the Library of Congress named Stephen Jay Gould one of America’s eighty-three Living Legends—people who embody the “quintessentially American ideal of individual creativity, conviction, dedication, and exuberance.” Each of these qualities finds full expression in this peerless work, the likes of which the scientific world has not seen—and may not see again—for well over a century.

APPENDIX A: Chronology of the Exploration of Subsurface Life -- APPENDIX B: Chronology of the Meeting of the U.S. DOE's SSP Meetings -- NOTES -- REFERENCES -- INDEX

Featuring in-depth contributions from an international team of experts, the Biology of Turtles provides the first comprehensive review of the Testudinata. The book starts with the premise that the structure of turtles is particularly interesting and best understood within the context of their development, novelty, functional diversity, and e

How did human beings acquire imaginations that can conjure up untrue possibilities? How did the Universe become self-aware? In The Runes of Evolution, Simon Conway Morris revitalizes the study of evolution from the perspective of convergence, providing us with compelling new evidence to support the mounting scientific view that the history of life is far more predictable than once thought. A leading evolutionary biologist at the University of Cambridge, Conway Morris came into international prominence for his work on the Cambrian explosion (especially fossils of the Burgess Shale) and evolutionary convergence, which is the process whereby organisms not closely related (not monophyletic), independently evolve similar traits as a result of having to adapt to similar environments or ecological niches. In The Runes of Evolution, he illustrates how the ubiquity of convergence hints at an underlying framework whereby many outcomes, not least brains and intelligence, are virtually guaranteed on any Earth-like planet. Conway Morris also emphasizes how much of the complexity of advanced biological systems is inherent in microbial forms. By casting a wider net, The Runes of Evolution explores many neglected evolutionary questions. Some are remarkably general. Why, for example, are convergences such as parasitism, carnivory, and nitrogen fixation in plants concentrated in particular taxonomic hot spots? Why do certain groups have a particular propensity to evolve toward particular states? Some questions lead to unexpected evolutionary insights: If bees sleep (as they do), do they dream? Why is that insect copulating with an orchid? Why have sponges evolved a system of fiber optics? What do mantis shrimps and submarines have in common? If dinosaurs had not gone extinct what would have happened next? Will a saber-toothed cat ever re-evolve? Cona Morris observes: “Even amongst the mammals, let alone the entire tree of life, humans represent one minute twig of a vast (and largely fossilized) arborescence. Every living species is a linear descendant of an immense string of now-vanished ancestors, but evolution itself is the very reverse of linear. Rather it is endlessly exploratory, probing the vast spaces of biological hyperspace. Indeed this book is a celebration of how our world is (and was) populated by a riot of forms, a coruscating tapestry of life.” The Runes of Evolution is the most definitive synthesis of evolutionary convergence to be published to date.