It’s tough to argue with R as a high-quality, cross-platform, open source statistical software product—unless you’re in the business of crunching Big Data. This concise book introduces you to several strategies for using R to analyze large datasets, including three chapters on using R and Hadoop together. You’ll learn the basics of Snow, Multicore, Parallel, Segue, RHIPE, and Hadoop Streaming, including how to find them, how to use them, when they work well, and when they don’t. With these packages, you can overcome R’s single-threaded nature by spreading work across multiple CPUs, or offloading work to multiple machines to address R’s memory barrier. Snow: works well in a traditional cluster environment Multicore: popular for multiprocessor and multicore computers Parallel: part of the upcoming R 2.14.0 release R+Hadoop: provides low-level access to a popular form of cluster computing RHIPE: uses Hadoop’s power with R’s language and interactive shell Segue: lets you use Elastic MapReduce as a backend for lapply-style operations

This is one of the first parallel computing books to focus exclusively on parallel data structures, algorithms, software tools, and applications in data science. The book prepares readers to write effective parallel code in various languages and learn more about different R packages and other tools. It covers the classic n observations, p variables matrix format and common data structures. Many examples illustrate the range of issues encountered in parallel programming.

Master the robust features of R parallel programming to accelerate your data science computations About This Book Create R programs that exploit the computational capability of your cloud platforms and computers to the fullest Become an expert in writing the most efficient and highest performance parallel algorithms in R Get to grips with the concept of parallelism to accelerate your existing R programs Who This Book Is For This book is for R programmers who want to step beyond its inherent single-threaded and restricted memory limitations and learn how to implement highly accelerated and scalable algorithms that are a necessity for the performant processing of Big Data. No previous knowledge of parallelism is required. This book also provides for the more advanced technical programmer seeking to go beyond high level parallel frameworks. What You Will Learn Create and structure efficient load-balanced parallel computation in R, using R's built-in parallel package Deploy and utilize cloud-based parallel infrastructure from R, including launching a distributed computation on Hadoop running on Amazon Web Services (AWS) Get accustomed to parallel efficiency, and apply simple techniques to benchmark, measure speed and target improvement in your own code Develop complex parallel processing algorithms with the standard Message Passing Interface (MPI) using RMPI, pbdMPI, and SPRINT packages Build and extend a parallel R package (SPRINT) with your own MPI-based routines Implement accelerated numerical functions in R utilizing the vector processing capability of your Graphics Processing Unit (GPU) with OpenCL Understand parallel programming pitfalls, such as deadlock and numerical instability, and the approaches to handle and avoid them Build a task farm master-worker, spatial grid, and hybrid parallel R programs In Detail R is one of the most popular programming languages used in data science. Applying R to big data and complex analytic tasks requires the harnessing of scalable compute resources. Mastering Parallel Programming with R presents a comprehensive and practical treatise on how to build highly scalable and efficient algorithms in R. It will teach you a variety of parallelization techniques, from simple use of R's built-in parallel package versions of lapply(), to high-level AWS cloud-based Hadoop and Apache Spark frameworks. It will also teach you low level scalable parallel programming using RMPI and pbdMPI for message passing, applicable to clusters and supercomputers, and how to exploit thousand-fold simple processor GPUs through ROpenCL. By the end of the book, you will understand the factors that influence parallel efficiency, including assessing code performance and implementing load balancing; pitfalls to avoid, including deadlock and numerical instability issues; how to structure your code and data for the most appropriate type of parallelism for your problem domain; and how to extract the maximum performance from your R code running on a variety of computer systems. Style and approach This book leads you chapter by chapter from the easy to more complex forms of parallelism. The author's insights are presented through clear practical examples applied to a range of different problems, with comprehensive reference information for each of the R packages employed. The book can be read from start to finish, or by dipping in chapter by chapter, as each chapter describes a specific parallel approach and technology, so can be read as a standalone.

Data science has taken the world by storm. Every field of study and area of business has been affected as people increasingly realize the value of the incredible quantities of data being generated. But to extract value from those data, one needs to be trained in the proper data science skills. The R programming language has become the de facto programming language for data science. Its flexibility, power, sophistication, and expressiveness have made it an invaluable tool for data scientists around the world. This book is about the fundamentals of R programming. You will get started with the basics of the language, learn how to manipulate datasets, how to write functions, and how to debug and optimize code. With the fundamentals provided in this book, you will have a solid foundation on which to build your data science toolbox.

A Tour of Data Science: Learn R and Python in Parallel covers the fundamentals of data science, including programming, statistics, optimization, and machine learning in a single short book. It does not cover everything, but rather, teaches the key concepts and topics in Data Science. It also covers two of the most popular programming languages used in Data Science, R and Python, in one source. Key features: Allows you to learn R and Python in parallel Cover statistics, programming, optimization and predictive modelling, and the popular data manipulation tools – data.table and pandas Provides a concise and accessible presentation Includes machine learning algorithms implemented from scratch, linear regression, lasso, ridge, logistic regression, gradient boosting trees, etc. Appealing to data scientists, statisticians, quantitative analysts, and others who want to learn programming with R and Python from a data science perspective.

New approaches to parallel computing are being developed that make better use of the heterogeneous cluster architecture Provides a detailed introduction to parallel computing on heterogenous clusters All concepts and algorithms are illustrated with working programs that can be compiled and executed on any cluster The algorithms discussed have practical applications in a range of real-life parallel computing problems, such as the N-body problem, portfolio management, and the modeling of oil extraction

An Essential Reference for Intermediate and Advanced R Programmers Advanced R presents useful tools and techniques for attacking many types of R programming problems, helping you avoid mistakes and dead ends. With more than ten years of experience programming in R, the author illustrates the elegance, beauty, and flexibility at the heart of R. The book develops the necessary skills to produce quality code that can be used in a variety of circumstances. You will learn: The fundamentals of R, including standard data types and functions Functional programming as a useful framework for solving wide classes of problems The positives and negatives of metaprogramming How to write fast, memory-efficient code This book not only helps current R users become R programmers but also shows existing programmers what’s special about R. Intermediate R programmers can dive deeper into R and learn new strategies for solving diverse problems while programmers from other languages can learn the details of R and understand why R works the way it does.

Shared Memory Application Programming presents the key concepts and applications of parallel programming, in an accessible and engaging style applicable to developers across many domains. Multithreaded programming is today a core technology, at the basis of all software development projects in any branch of applied computer science. This book guides readers to develop insights about threaded programming and introduces two popular platforms for multicore development: OpenMP and Intel Threading Building Blocks (TBB). Author Victor Alessandrini leverages his rich experience to explain each platform's design strategies, analyzing the focus and strengths underlying their often complementary capabilities, as well as their interoperability. The book is divided into two parts: the first develops the essential concepts of thread management and synchronization, discussing the way they are implemented in native multithreading libraries (Windows threads, Pthreads) as well as in the modern C++11 threads standard. The second provides an in-depth discussion of TBB and OpenMP including the latest features in OpenMP 4.0 extensions to ensure readers' skills are fully up to date. Focus progressively shifts from traditional thread parallelism to modern task parallelism deployed by modern programming environments. Several chapter include examples drawn from a variety of disciplines, including molecular dynamics and image processing, with full source code and a software library incorporating a number of utilities that readers can adapt into their own projects. - Designed to introduce threading and multicore programming to teach modern coding strategies for developers in applied computing - Leverages author Victor Alessandrini's rich experience to explain each platform's design strategies, analyzing the focus and strengths underlying their often complementary capabilities, as well as their interoperability - Includes complete, up-to-date discussions of OpenMP 4.0 and TBB - Based on the author's training sessions, including information on source code and software libraries which can be repurposed

Learn, by example, the fundamentals of data analysis as well as several intermediate to advanced methods and techniques ranging from classification and regression to Bayesian methods and MCMC, which can be put to immediate use. Key Features Analyze your data using R – the most powerful statistical programming language Learn how to implement applied statistics using practical use-cases Use popular R packages to work with unstructured and structured data Book Description Frequently the tool of choice for academics, R has spread deep into the private sector and can be found in the production pipelines at some of the most advanced and successful enterprises. The power and domain-specificity of R allows the user to express complex analytics easily, quickly, and succinctly. Starting with the basics of R and statistical reasoning, this book dives into advanced predictive analytics, showing how to apply those techniques to real-world data though with real-world examples. Packed with engaging problems and exercises, this book begins with a review of R and its syntax with packages like Rcpp, ggplot2, and dplyr. From there, get to grips with the fundamentals of applied statistics and build on this knowledge to perform sophisticated and powerful analytics. Solve the difficulties relating to performing data analysis in practice and find solutions to working with messy data, large data, communicating results, and facilitating reproducibility. This book is engineered to be an invaluable resource through many stages of anyone’s career as a data analyst. What you will learn Gain a thorough understanding of statistical reasoning and sampling theory Employ hypothesis testing to draw inferences from your data Learn Bayesian methods for estimating parameters Train regression, classification, and time series models Handle missing data gracefully using multiple imputation Identify and manage problematic data points Learn how to scale your analyses to larger data with Rcpp, data.table, dplyr, and parallelization Put best practices into effect to make your job easier and facilitate reproducibility Who this book is for Budding data scientists and data analysts who are new to the concept of data analysis, or who want to build efficient analytical models in R will find this book to be useful. No prior exposure to data analysis is needed, although a fundamental understanding of the R programming language is required to get the best out of this book.

Numerical algorithms, modern programming techniques, and parallel computing are often taught serially across different courses and different textbooks. The need to integrate concepts and tools usually comes only in employment or in research - after the courses are concluded - forcing the student to synthesise what is perceived to be three independent subfields into one. This book provides a seamless approach to stimulate the student simultaneously through the eyes of multiple disciplines, leading to enhanced understanding of scientific computing as a whole. The book includes both basic as well as advanced topics and places equal emphasis on the discretization of partial differential equations and on solvers. Some of the advanced topics include wavelets, high-order methods, non-symmetric systems, and parallelization of sparse systems. The material covered is suited to students from engineering, computer science, physics and mathematics.