An introduction to the field of applied ontology with examples derived particularly from biomedicine, covering theoretical components, design practices, and practical applications. In the era of “big data,” science is increasingly information driven, and the potential for computers to store, manage, and integrate massive amounts of data has given rise to such new disciplinary fields as biomedical informatics. Applied ontology offers a strategy for the organization of scientific information in computer-tractable form, drawing on concepts not only from computer and information science but also from linguistics, logic, and philosophy. This book provides an introduction to the field of applied ontology that is of particular relevance to biomedicine, covering theoretical components of ontologies, best practices for ontology design, and examples of biomedical ontologies in use. After defining an ontology as a representation of the types of entities in a given domain, the book distinguishes between different kinds of ontologies and taxonomies, and shows how applied ontology draws on more traditional ideas from metaphysics. It presents the core features of the Basic Formal Ontology (BFO), now used by over one hundred ontology projects around the world, and offers examples of domain ontologies that utilize BFO. The book also describes Web Ontology Language (OWL), a common framework for Semantic Web technologies. Throughout, the book provides concrete recommendations for the design and construction of domain ontologies.

Formal ontology combines two ideas, one originating with Husserl, the other with Frege: that of ontology of the formal aspects of all objects, irrespective of their particular nature, and ontology pursued by employing the tools of modern formal disciplines, notably logic and semantics. These two traditions have converged in recent years and this is the first collection to encompass them as a whole in a single volume. It assembles essays from authors around the world already widely known for their work in formal ontology, and illustrates that through the application of formal methods the ancient discipline of ontology may be put on a firm methodological basis. The essays not only illuminate the nature of ontology and its relation to other areas, in language, logic and everyday life, but also demonstrate that common issues from the analytical and phenomenological traditions may be discussed without ideological barriers. Audience: advanced students of and specialists in philosophy, linguistics, cognitive science, computer science, database engineering.

FOIS is the flagship conference of the International Association for Ontology and its Applications (IAOA). Its interdisciplinary research focus lies at the intersection of philosophical ontology, linguistics, logic, cognitive science, and computer science, as well as in the applications of ontological analysis to conceptual modeling, knowledge engineering, knowledge management, information-systems development, library and information science, scientific research, and semantic technologies in general. This volume presents the proceedings of FOIS 2018, held in Cape Town, South Africa, from 19-21 September. It was the 10th edition and 20th anniversary of the conference series. The volume contains 19 papers grouped into 4 sections: Foundations (7 papers), Agents and Properties (4 papers), Methods and Tools (4 papers), and Applications (4 papers). Regarding the applications of ontologies, a broad spectrum of areas is covered, including in particular biology and medicine, IoT, engineering and linguistics. Formal Ontology in Information Systems - Proceedings of the 10th International Conference (FOIS 2018) will be of interest to researchers from all disciplines with an interest in formal ontology.

Ontology began life in ancient times as a fundamental part of philosophical enquiry concerned with the analysis and categorisation of what exists. In recent years, the subject has taken a practical turn with the advent of complex computerised information systems which are reliant on robust and coherent representations of their subject matter. The systematisation and elaboration of such representations and their associated reasoning techniques constitute the modern discipline of formal ontology, which is now being applied to such diverse domains as artificial intelligence, computational linguistics, bioinformatics, GIS, knowledge engineering, information retrieval and the Semantic Web. Researchers in all these areas are becoming increasingly aware of the need for serious engagement with ontology, understood as a general theory of the types of entities and relations making up their respective domains of enquiry, to provide a solid foundation for their work. The conference series Formal Ontology in Information Systems (FOIS) provides a meeting point for researchers from these and other disciplines with an interest in formal ontology, where both theoretical issues and concrete applications can be explored in a spirit of genuine interdisciplinarity. This volume contains the proceedings of the sixth FOIS conference, held in Toronto, Canada, during 11-14 May 2010, including invited talks by Francis Jeffry Pelletier, John Bateman, and Alan Rector and the 28 peer-reviewed submissions selected for presentation at the conference, ranging from foundational issues to more application-oriented topics. IOS Press is an international science, technical and medical publisher of high-quality books for academics, scientists, and professionals in all fields. Some of the areas we publish in: -Biomedicine -Oncology -Artificial intelligence -Databases and information systems -Maritime engineering -Nanotechnology -Geoengineering -All aspects of physics -E-governance -E-commerce -The knowledge economy -Urban studies -Arms control -Understanding and responding to terrorism -Medical informatics -Computer Sciences

Ontology is the philosophical discipline which aims to understand how things in the world are divided into categories and how these categories are related together. This is exactly what information scientists aim for in creating structured, automated representations, called ‘ontologies,’ for managing information in fields such as science, government, industry, and healthcare. Currently, these systems are designed in a variety of different ways, so they cannot share data with one another. They are often idiosyncratically structured, accessible only to those who created them, and unable to serve as inputs for automated reasoning. This volume shows, in a non-technical way and using examples from medicine and biology, how the rigorous application of theories and insights from philosophical ontology can improve the ontologies upon which information management depends.

Contemporary analytic philosophy can generally be characterized by the following tendencies: commitment to first-order predicate logic as the only viable formal logic; rejection of correspondence theories of truth; a view of existence as something expressed by the existential quantifier; a metaphysics that doesn’t give the world as a whole its due. This book seeks to offer an alternative analytic theory, one that provides a unified account of what there is, how we speak about it, the underlying logic of our language, how the truth of what we say is determined, and the central role of the real world in all of this. The result is a robust account of reality. The inspiration for many of the ideas that constitute this overall theory comes from such sources as Aristotle, Leibniz, Ryle, and Sommers.

Formal ontology as a main branch of metaphysics investigates categories of being. In the formal ontological approach to metaphysics, these ontological categories are analysed by ontological forms. This analysis, which the Element illustrates by some category systems, provides a tool to assess the clarity, exactness and intelligibility of different category systems or formal ontologies. It discusses critically different accounts of ontological form in the literature. Of ontological form, the authors propose a character-neutral relational account. In this metatheory, ontological forms of entities are their standings in internal relations whose holding is neutral on the character of their relata. These relations are 'formal ontological relations'. The Element concludes by showing that our metatheory is useful for understanding categorial fundamentality/non-fundamentality, different formal ontologies, and for unifying metaphysical questions. This title is also available as Open Access on Cambridge Core.

Researchers in areas such as artificial intelligence, formal and computational linguistics, biomedical informatics, conceptual modeling, knowledge engineering and information retrieval have come to realize that a solid foundation for their research calls for serious work in ontology, understood as a general theory of the types of entities and relations that make up their respective domains of inquiry. In all these areas, attention is now being focused on the content of information rather than on just the formats and languages used to represent information. The clearest example of this development is provided by the many initiatives growing up around the project of the Semantic Web. And, as the need for integrating research in these different fields arises, so does the realization that strong principles for building well-founded ontologies might provide significant advantages over ad hoc, case-based solutions. The tools of formal ontology address precisely these needs, but a real effort is required in order to apply such philosophical tools to the domain of information systems. ontological questions which call for further philosophical investigations. The purpose of FOIS is to provide a forum for genuine interdisciplinary exchange in the spirit of a unified effort towards solving the problems of ontology, with an eye to both theoretical issues and concrete applications. This book contains a wide range of areas, all of which are important to the development of formal ontologies.

Research on ontology is becoming increasingly widespread in the computer science community. While this term has been rather confined to the philosophical sphere in the past, it is now gaining a specific role in areas such as Artificial Intelligence, Computational Linguistics, and Databases. Its importance has been recognized in fields as diverse as knowledge engineering, knowledge representation, qualitative modeling, language engineering, database design, information integration, object-oriented analysis, information retrieval and extraction, knowledge management and organization, agent-based systems design. Current applications areas are disparate, including enterprise integration, natural language translation, medicine, mechanical engineering, electronic commerce, geographic information systems, legal information systems, and biological information systems. Various workshops addressing the engineering aspects of ontology have been held in the recent years. However, ontology by 'its very nature' ought to be a unifying discipline. Insights in this field have potential impact on the whole area of information systems (taking this term in its broadest sense), as testified by the interest recently shown by international standards organizations. In order to provide a solid general foundation for this work, it is therefore important to focus on the common scientific principles and open problems arising from current tools, methodologies, and applications of ontology.