The last 30 years has seen the development of increasingly sophisticated models that quantify canopy carbon exchange. These models are now essential parts of larger models for prediction and simulation of crop production, climate change, and regional and global carbon dynamics. There is thus an urgent need for increasing expertise in developing, use and understanding of these models. This in turn calls for an advanced, yet easily accessible textbook that summarizes the “canopy science” and introduces the present and the future scientists to the theoretical background of the current canopy models. This book presents current knowledge of functioning of plant canopies, models and strategies employed to simulate canopy function, and the significance of canopy architecture, physiology and dynamics in ecosystems, landscape and biosphere.

Provides an essential introduction to modeling terrestrial ecosystems in Earth system models for graduate students and researchers.

This volume is a synthesis of current knowledge about the growth, development and functioning of plant canopies.

Learn to use modeling and simulation methods to attack real-world problems, from physics to engineering, from life sciences to process engineering Reviews of the first edition (2009): "Perfectly fits introductory modeling courses [...] and is an enjoyable reading in the first place. Highly recommended [...]" —Zentralblatt MATH, European Mathematical Society, 2009 "This book differs from almost all other available modeling books in that [the authors address] both mechanistic and statistical models as well as 'hybrid' models. [...] The modeling range is enormous." —SIAM Society of Industrial and Applied Mathematics, USA, 2011 This completely revised and substantially extended second edition answers the most important questions in the field of modeling: What is a mathematical model? What types of models do exist? Which model is appropriate for a particular problem? What are simulation, parameter estimation, and validation? What kind of mathematical problems appear and how can these be efficiently solved using professional free of charge open source software? The book addresses undergraduates and practitioners alike. Although only basic knowledge of calculus and linear algebra is required, the most important mathematical structures are discussed in sufficient detail, ranging from statistical models to partial differential equations and accompanied by examples from biology, ecology, economics, medicine, agricultural, chemical, electrical, mechanical, and process engineering. About 200 pages of additional material include a unique chapter on virtualization, Crash Courses on the data analysis and programming languages R and Python and on the computer algebra language Maxima, many new methods and examples scattered throughout the book and an update of all software-related procedures and a comprehensive book software providing templates for typical modeling tasks in thousands of code lines. The book software includes GmLinux, an operating system specifically designed for this book providing preconfigured and ready-to-use installations of OpenFOAM, Salome, FreeCAD/CfdOF workbench, ParaView, R, Maxima/wxMaxima, Python, Rstudio, Quarto/Markdown and other free of charge open source software used in the book.

Growth, reproduction, and geographical distribution of plants are profoundly influenced by their physiological ecology: the interaction with the surrounding physical, chemical, and biological environments. This textbook highlights mechanisms that underlie plant physiological ecology at the levels of physiology, biochemistry, biophysics, and molecular biology. At the same time, the integrative power of physiological ecology is well suited to assess the costs, benefits, and consequences of modifying plants for human needs and to evaluate the role of plants in natural and managed ecosystems. Plant Physiological Ecology, Third Edition is significantly updated, with many full color illustrations, and begins with the primary processes of carbon metabolism and transport, plant water relations, and energy balance. After considering individual leaves and whole plants, these physiological processes are then scaled up to the level of the canopy. Subsequent chapters discuss mineral nutrition and the ways in which plants cope with nutrient‐deficient or toxic soils. The book then looks at patterns of growth and allocation, life‐history traits, and interactions between plants and other organisms. Later chapters deal with traits that affect decomposition of plant material and with the consequences of plant physiological ecology at ecosystem and global levels. Plant Physiological Ecology, Third Edition features several boxed entries that extend the discussions of selected issues, a glossary, and numerous references to the primary and review literature. This significant new text is suitable for use in plant ecology courses, as well as classes ranging from plant physiology to plant molecular biology.

Chloroplast development is a key feature of leaf developmental program. Recent advances in plant biology reveal that chloroplasts also determine the development, the structure and the physiology of the entire plant. The books, published thus far, have emphasized the biogenesis of the organelle, but not the events associated with the transformation of the mature chloroplast to the gerontoplast during senescence. This book, with 28 chapters, is unique because it describes how the chloroplast matures and how it is subsequently transformed to become the gerontoplast during senescence, a process required for nutrient recycling in plants. This book includes a state-of-the-art survey of the current knowledge on the regulation and the mechanisms of chloroplast development. Some of the chapters critically discuss the signaling process, the expression potential of plastid DNA, the interaction of cellular organelles, and the molecular mechanisms associated with the assembly and the disassembly of organellar complexes and finally the modulation of chloroplast development by environmental signals.

The past decade has witnessed an explosion of our knowledge on the structure, coding capacity and evolution of the genomes of the two DNA-containing cell organelles in plants: chloroplasts (plastids) and mitochondria. Comparative genomics analyses have provided new insights into the origin of organelles by endosymbioses and uncovered an enormous evolutionary dynamics of organellar genomes. In addition, they have greatly helped to clarify phylogenetic relationships, especially in algae and early land plants with limited morphological and anatomical diversity. This book, written by leading experts, summarizes our current knowledge about plastid and mitochondrial genomes in all major groups of algae and land plants. It also includes chapters on endosymbioses, plastid and mitochondrial mutants, gene expression profiling and methods for organelle transformation. The book is designed for students and researchers in plant molecular biology, taxonomy, biotechnology and evolutionary biology.

This handbook covers the most commonly used techniques for measuring plant response to biotic and abiotic stressing factors, including: in vitro and in vivo bioassays; the study of root morphology, photosynthesis (pigment content, net photosynthesis, respiration, fluorescence and thermoluminiscence) and water status; thermal imaging; the measurement of oxidative stress markers; flow cytometry for measuring cell cycle and other physiological parameters; the use of microscope techniques for studying plant microtubules; programmed-cell-death; last-generation techniques (metabolomics, proteomics, SAR/QSAR); hybridization methods; isotope techniques for plant and soil studies; and the measurement of detoxification pathways, volatiles, soil microorganisms, and computational biology.

This book provides updated and comprehensive information on the evaluation of the river basin environment, along with its management and conservation. The chapters collected the latest cutting-edge research achievements in vegetation function evaluation, remote sensing monitoring and analysis, water quality evaluation and control, water and wastewater treatment, soil remediation, forest resource management, microbial disease diagnosis and more, the key components that link directly with the safety, security and sustainability of river basin environment. This book emphasizes the important aspects for better and more effective evaluation, management and conservation of the river basin environment, the foundation for its sustainable utilization and development, the foundation for achieving water and food security, and the United Nations’ SDGs for No Poverty (1), Zero Hunger (2) and Clean Water and Sanitation (6), as well as Affordable and Clean Energy (7), Sustainable Cities and Communities (11), Climate Action (13), Life below Water (14) and Life on Land (15). This book will benefit the research community and environmental education. It will prove useful to students, water and forest resource managers, hydrologists and all those engaged or interested in any aspect of evaluation, management, and conservation of the river basin environment. The book also has the potential to inform multi-regional and sectoral policies in all regions of the world and contribute to sustainable development solutions through better management of water, soil, and vegetation resources.

The fascinating machinery that life uses to harness energy is the focus of this volume of the Advances in Photosynthesis and Respiration series. Experts in the field communicate their insights into the mechanisms that govern biological energy conversion from the atomic scale to the physiological integration within organisms. By leveraging the power of current structural techniques the authors reveal the inner workings of life.