The earth's subsurface contains abundant and active microbial biomass, living in water, occupying pore space, and colonizing mineral and rock surfaces. Caves are one type of subsurface habitat, being natural, solutionally- or collapse-enlarged openings in rock. Within the past 30 years, there has been an increase in the number of microbiology studies from cave environments to understand cave ecology, cave geology, and even the origins of life. By emphasizing the microbial life of caves, and the ecological processes and geological consequences attributed to microbes, this book provides the first authoritative and comprehensive account of the microbial life of caves for students, professionals, and general readers.

Over the last two decades, exploration of the deep subsurface biosphere has developed into a major research area. New findings constantly challenge our concepts of global biogeochemical cycles and the ultimate limits to life. In order to explain our observations from deep subsurface ecosystems it is necessary to develop truly interdisciplinary approaches, ranging from microbiology and geochemistry to physics and modeling. This book aims to bring together a wide variety of topics, covering the broad range of issues that are associated with deep biosphere exploration. Not only does the book present case studies of selected projects, but also treats questions arising from our current knowledge. Despite nearly two decades of research, there are still many boundaries to exploration caused by technical limitations and one section of the book is devoted to these technical challenges and the latest developments in this field. This volume will be of high interest to biologists, chemists and earth scientists all working on the deep biosphere.

Microorganisms are a major part of the Earth's biological diversity. Although a lot of research has been done on microbial diversity, most of it is fragmented. This book creates the need for a unified text to be published, full of information about microbial diversity from highly reputed and impactful sources. Recent Advancements in Microbial Diversity brings a comprehensive understanding of the recent advances in microbial diversity research focused on different bodily systems, such as the gut. Recent Advancements in Microbial Diversity also discusses how the application of advanced sequencing technologies is used to reveal previously unseen microbial diversity and show off its function. - Gives insight into microbial diversity in different bodily systems - Explains novel approaches to studying microbial diversity - Highlights the use of omics to analyze the microbial community and its functional attributes - Discusses the techniques used to examine microbial diversity, including their applications and respective strengths and weaknesses

Caves are dark, underground hollow spaces with relatively constant temperature, high humidity, and limited nutrients. Many caves are associated with karst topography, which is formed by the dissolution of soluble bedrock, such as limestone, dolomite and gypsum, in areas where groundwaters are undersaturated with respect to the minerals in the host rock. Karst landforms spread widely, accounting for approximately 20% of the earth’s dry ice-free surface (Ford and Williams, 2007). As a typical feature of subsurface landscape, karst caves develop globally, with over 50,000 distributed in the United States (Barton and Jurado, 2007). China also has a large contiguous karst terrain, and the Yunnan–Guizhou plateau in the southwest developed most karst caves, among which the longest cave exceeds 138 km (Zhang and Zhu, 2012). Many caves are relatively shallow and form near the water table in karst terranes, although some caves develop by deep-seated hypogenic process at substantial depths and by process other than dissolution such as lava flows. Caves are oligotrophic ecosystems with less than 2 mg of total organic carbon per liter, yet host flourishing microbial groups (Figure 1A), with an average number of 106 microbial cells per gram of cave rock (Barton and Jurado, 2007). The study revealed a high diversity within Bacteria domain and Proteobacteria and Actinobacteria were abundant in oligotrophic cave samples of air, rock, sediment and water. Chloroflexi, Planctomycetes, Bacteroidetes, Firmicutes, Acidobacteria, Nitrospirae, Gemmatimonadetes, and Verrucomicrobia also accounted for large proportions of the total microbial community in caves (Wu et al., 2015; Zhu et al., 2019). In some organic cave samples such as biofilms in sulfur cave, bat guanos, spiders’ webs and earthworm castings, Mycobacterium was prevalently detected (Modra et al., 2017; Sarbu et al., 2018; Hubelova et al., 2021; Pavlik et al., 2021). Over 500 genera of fungi, such as Penicillium, Aspergillus and Mortierella have been reported in caves (Vanderwolf et al., 2013), and new fungal species were identified from cave air, rock, sediment and water samples (Zhang et al., 2017, 2021). These microbial communities contain novel diversity, and promote important biogeochemical processes. With no sunlight, microorganisms in cave environment cannot perform photosynthesis, and are intensively involved in the biogeochemical cycles of carbon, nitrogen, sulfur, and metals such as Fe and Mn to offset the lack of exogenous nutrients and energy.

This volume comprehensively reviews recent advances in our understanding of the diversity of microbes in various types of terrestrial ecosystems, such as caves, deserts and cultivated fields. It is written by leading experts, and highlights the culturable microbes identified using conventional approaches, as well as non-culturable ones unveiled with metagenomic and microbiomic approaches. It discusses the role of microbes in ecosystem sustainability and their potential biotechnological applications. The book further discusses the diversity and utility of ectomycorrhizal and entomopathogenic fungi and yeasts that dwell on grapes, it examines the biotechnological applications of specific microbes such as lichens, xylan- and cellulose-saccharifying bacteria and archaea, chitinolytic bacteria, methanogenic archaea and pathogenic yeasts.

Encyclopedia of Caves, Third Edition, provides detailed background information to anyone with a serious interest in caves. This includes students, both undergraduate and graduate, in the earth, biological and environmental sciences, and consultants, environmental scientists, land managers and government agency staff whose work requires them to know something about caves and the biota that inhabit them. Caves touch on many scientific interests in geology, climate science, biology, hydrology, archaeology, and paleontology, as well as more popular interests in sport caving and cave exploration. Case studies and descriptions of specific caves selected for their special features and public interest are also included. This book will appeal to these audiences by providing in-depth essays written by expert authors chosen for their expertise in their assigned subject. - Features 14 new chapters and 13 completely rewritten chapters - Contains beautifully illustrated content, with more than 500 color images of cave life and features - Provides extensive bibliographies that allow readers to access their subject of interest in greater depth

Cave organisms are the ‘monsters’ of the underground world and studying them invariably raises interesting questions about the ways evolution has equipped them to survive in permanent darkness and low-energy environments. Undertaking ecological studies in caves and other subterranean habitats is not only challenging because they are difficult to access, but also because the domain is so different from what we know from the surface, with no plants at the base of food chains and with a nearly constant microclimate year-round. The research presented here answers key questions such as how a constant environment can produce the enormous biodiversity seen below ground, what adaptations and peculiarities allow subterranean organisms to thrive, and how they are affected by the constraints of their environment. This book is divided into six main parts, which address: the habitats of cave animals; their complex diversity; the environmental factors that support that diversity; individual case studies of cave ecosystems; and of the conservation challenges they face; all of which culminate in proposals for future research directions. Given its breadth of coverage, it offers an essential reference guide for graduate students and established researchers alike.

This book presents the latest advances in karstology by researchers at the ZRC SAZU Karst Research Institute, Slovenia – home of Classical Karst. It features interdisciplinary investigations carried out on the karst surface, subsurface, caves, and associated waters. It covers various topics, such as analysis of karst processes, including the mineralogical and lithological characteristics of sediments and carbonate rocks; structural geological mapping; detecting the old traces of paleokarst; the formation of karst surfaces in a variety of types of rock and conditions; and the evolution of karst, which can aid in dating sediments, and in tracing aquifers using artificial and natural tracers. In addition, the book provides detailed information on the use and development of various research methods, ranging from comprehensive field research, long-term measurements, and laboratory analyses to computer and laboratory modeling. Integrating karst geology, geomorphology, hydrology, ecology, speleobiology, and microbiology research, these methods provide readers with a far deeper understanding of karst terrains.

The author tells of adventures that include New Mexico's Lechuguilla Cave and dark life below Washington State that resembles "micro-fossils" found in a Martian meteorite.

This book reveals the science and beauty of Mammoth Cave, the world's longest cave, which has played an important role in the natural sciences. It offers a comprehensive and interdisciplinary treatment of the cave, combining insights from leading experts in fields ranging from archeology and cultural history to life science and geosciences. The first animals specialized for cave life in North America, including beetles, spiders, crayfish, and fish, were discovered in Mammoth Cave in the 1840s. It has also been used and explored by humans, including Native Americans, who mined its sulfate minerals and later African-American slaves, who made a map of the cave. More recent stories include 'wars' between commercial cave owners, epic exploration trips by modern cave explorers, and of course tourism. The first section of the book is an extensive description including maps and photos of the cave, its basic structural pattern, and how it relates to the surface landscape. The second section covers the human history of utilization and exploration of the cave, including mining, tourism, and medical experiments. Cave science is the topic of the third section, including geology, hydrology, mineralogy, climatology, paleontology, ecology, biodiversity, and microbiology. The fourth section looks to the future, with an overview of environmental issues facing Mammoth Cave managers. The book is intended for anyone interested in caves in general and Mammoth Cave in particular, experts in one discipline seeking information about other areas, and researchers and students interested in the many avenues of pursuit possible in Mammoth Cave.