An introduction to the field of applied ontology with examples derived particularly from biomedicine, covering theoretical components, design practices, and practical applications. In the era of “big data,” science is increasingly information driven, and the potential for computers to store, manage, and integrate massive amounts of data has given rise to such new disciplinary fields as biomedical informatics. Applied ontology offers a strategy for the organization of scientific information in computer-tractable form, drawing on concepts not only from computer and information science but also from linguistics, logic, and philosophy. This book provides an introduction to the field of applied ontology that is of particular relevance to biomedicine, covering theoretical components of ontologies, best practices for ontology design, and examples of biomedical ontologies in use. After defining an ontology as a representation of the types of entities in a given domain, the book distinguishes between different kinds of ontologies and taxonomies, and shows how applied ontology draws on more traditional ideas from metaphysics. It presents the core features of the Basic Formal Ontology (BFO), now used by over one hundred ontology projects around the world, and offers examples of domain ontologies that utilize BFO. The book also describes Web Ontology Language (OWL), a common framework for Semantic Web technologies. Throughout, the book provides concrete recommendations for the design and construction of domain ontologies.

Formal ontology combines two ideas, one originating with Husserl, the other with Frege: that of ontology of the formal aspects of all objects, irrespective of their particular nature, and ontology pursued by employing the tools of modern formal disciplines, notably logic and semantics. These two traditions have converged in recent years and this is the first collection to encompass them as a whole in a single volume. It assembles essays from authors around the world already widely known for their work in formal ontology, and illustrates that through the application of formal methods the ancient discipline of ontology may be put on a firm methodological basis. The essays not only illuminate the nature of ontology and its relation to other areas, in language, logic and everyday life, but also demonstrate that common issues from the analytical and phenomenological traditions may be discussed without ideological barriers. Audience: advanced students of and specialists in philosophy, linguistics, cognitive science, computer science, database engineering.

FOIS is the flagship conference of the International Association for Ontology and its Applications (IAOA). Its interdisciplinary research focus lies at the intersection of philosophical ontology, linguistics, logic, cognitive science, and computer science, as well as in the applications of ontological analysis to conceptual modeling, knowledge engineering, knowledge management, information-systems development, library and information science, scientific research, and semantic technologies in general. This volume presents the proceedings of FOIS 2018, held in Cape Town, South Africa, from 19-21 September. It was the 10th edition and 20th anniversary of the conference series. The volume contains 19 papers grouped into 4 sections: Foundations (7 papers), Agents and Properties (4 papers), Methods and Tools (4 papers), and Applications (4 papers). Regarding the applications of ontologies, a broad spectrum of areas is covered, including in particular biology and medicine, IoT, engineering and linguistics. Formal Ontology in Information Systems - Proceedings of the 10th International Conference (FOIS 2018) will be of interest to researchers from all disciplines with an interest in formal ontology.

Ontology began life in ancient times as a fundamental part of philosophical enquiry concerned with the analysis and categorisation of what exists. In recent years, the subject has taken a practical turn with the advent of complex computerised information systems which are reliant on robust and coherent representations of their subject matter. The systematisation and elaboration of such representations and their associated reasoning techniques constitute the modern discipline of formal ontology, which is now being applied to such diverse domains as artificial intelligence, computational linguistics, bioinformatics, GIS, knowledge engineering, information retrieval and the Semantic Web. Researchers in all these areas are becoming increasingly aware of the need for serious engagement with ontology, understood as a general theory of the types of entities and relations making up their respective domains of enquiry, to provide a solid foundation for their work. The conference series Formal Ontology in Information Systems (FOIS) provides a meeting point for researchers from these and other disciplines with an interest in formal ontology, where both theoretical issues and concrete applications can be explored in a spirit of genuine interdisciplinarity. This volume contains the proceedings of the sixth FOIS conference, held in Toronto, Canada, during 11-14 May 2010, including invited talks by Francis Jeffry Pelletier, John Bateman, and Alan Rector and the 28 peer-reviewed submissions selected for presentation at the conference, ranging from foundational issues to more application-oriented topics. IOS Press is an international science, technical and medical publisher of high-quality books for academics, scientists, and professionals in all fields. Some of the areas we publish in: -Biomedicine -Oncology -Artificial intelligence -Databases and information systems -Maritime engineering -Nanotechnology -Geoengineering -All aspects of physics -E-governance -E-commerce -The knowledge economy -Urban studies -Arms control -Understanding and responding to terrorism -Medical informatics -Computer Sciences

Ontology is the philosophical discipline which aims to understand how things in the world are divided into categories and how these categories are related together. This is exactly what information scientists aim for in creating structured, automated representations, called ‘ontologies,’ for managing information in fields such as science, government, industry, and healthcare. Currently, these systems are designed in a variety of different ways, so they cannot share data with one another. They are often idiosyncratically structured, accessible only to those who created them, and unable to serve as inputs for automated reasoning. This volume shows, in a non-technical way and using examples from medicine and biology, how the rigorous application of theories and insights from philosophical ontology can improve the ontologies upon which information management depends.

The book discusses the fate of universality and a universal set in several set theories. The book aims at a philosophical study of ontological and conceptual questions around set theory. Set theories are ontologies. They posit sets and claim that these exhibit the essential properties laid down in the set theoretical axioms. Collecting these postulated entities quantified over poses the problem of universality. Is the collection of the set theoretical entities itself a set theoretical entity? What does it mean if it is, and what does it mean if it is not? To answer these questions involves developing a theory of the universal set. We have to ask: Are there different aspects to universality in set theory, which stand in conflict to each other? May inconsistency be the price to pay to circumvent ineffability? And most importantly: How far can axiomatic ontology take us out of the problems around universality?

Contemporary analytic philosophy can generally be characterized by the following tendencies: commitment to first-order predicate logic as the only viable formal logic; rejection of correspondence theories of truth; a view of existence as something expressed by the existential quantifier; a metaphysics that doesn’t give the world as a whole its due. This book seeks to offer an alternative analytic theory, one that provides a unified account of what there is, how we speak about it, the underlying logic of our language, how the truth of what we say is determined, and the central role of the real world in all of this. The result is a robust account of reality. The inspiration for many of the ideas that constitute this overall theory comes from such sources as Aristotle, Leibniz, Ryle, and Sommers.

Formal ontology as a main branch of metaphysics investigates categories of being. In the formal ontological approach to metaphysics, these ontological categories are analysed by ontological forms. This analysis, which the Element illustrates by some category systems, provides a tool to assess the clarity, exactness and intelligibility of different category systems or formal ontologies. It discusses critically different accounts of ontological form in the literature. Of ontological form, the authors propose a character-neutral relational account. In this metatheory, ontological forms of entities are their standings in internal relations whose holding is neutral on the character of their relata. These relations are 'formal ontological relations'. The Element concludes by showing that our metatheory is useful for understanding categorial fundamentality/non-fundamentality, different formal ontologies, and for unifying metaphysical questions. This title is also available as Open Access on Cambridge Core.

Theories about the ontological structure of the world have generally been described in informal, intuitive terms. This book offers an account of the general features and methodology of formal ontology. The book defends conceptual realism as the best system to adopt based on a logic of natural kinds. By formally reconstructing an intuitive, informal ontological scheme as a formal ontology we can better determine the consistency and adequacy of that scheme.